Package: scregclust
Title: Reconstructing the Regulatory Programs of Target Genes in
        scRNA-Seq Data
Version: 0.2.5
Authors@R: c(
    person("Felix", "Held", ,"felix.held@gmail.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-7679-7752")),
    person("Ida", "Larsson", ,"ida.larsson@igp.uu.se", role = c("aut"),
           comment = c(ORCID = "0000-0001-5422-4243")),
    person("Sven", "Nelander", ,"sven.nelander@igp.uu.se", role = c("aut"),
           comment = c(ORCID = "0000-0003-1758-1262")),
    person("André", "Armatowski", role = c("ctb")))
Description: Implementation of the scregclust algorithm described in
        Larsson, Held, et al. (2024) <doi:10.1038/s41467-024-53954-3>
        which reconstructs regulatory programs of target genes in
        scRNA-seq data. Target genes are clustered into modules and
        each module is associated with a linear model describing the
        regulatory program.
Encoding: UTF-8
Depends: R (>= 4.1.0)
Imports: Matrix, stats, methods, utils, reshape, igraph, graphics,
        grid, cli, prettyunits, ggplot2, rlang, Rcpp (>= 1.0.8)
Suggests: testthat (>= 3.0.0), quarto, Seurat (>= 5.0.0), hdf5r,
        glmGamPoi, GEOquery
LinkingTo: Rcpp, RcppEigen
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
License: GPL (>= 3)
Config/testthat/edition: 3
URL: https://scmethods.github.io/scregclust/,
        https://github.com/scmethods/scregclust/
BugReports: https://github.com/scmethods/scregclust/issues
Config/Needs/website: quarto
Config/pak/sysreqs: libglpk-dev libxml2-dev
Repository: https://scmethods.r-universe.dev
Date/Publication: 2026-05-03 07:05:35 UTC
RemoteUrl: https://github.com/scmethods/scregclust
RemoteRef: HEAD
RemoteSha: ee69d147be6ad1ed96722f638240600069bf5854
NeedsCompilation: yes
Packaged: 2026-09-21 10:37:26 UTC; root
Author: Felix Held [aut, cre] (ORCID: <https://orcid.org/0000-0002-7679-7752>),
  Ida Larsson [aut] (ORCID: <https://orcid.org/0000-0001-5422-4243>),
  Sven Nelander [aut] (ORCID: <https://orcid.org/0000-0003-1758-1262>),
  André Armatowski [ctb]
Maintainer: Felix Held <felix.held@gmail.com>